Claude Code skills tagged Science

Skills for scientific computing, research workflows, and domain-specific scientific tools.

74 skills

Bioinformatics (8)

Single-cell RNA-seq, genomics, proteomics, and biological data analysis pipelines.

• scanpy

  Run standard single-cell RNA-seq analysis pipelines

  bioinformatics

• anndata

  Manage annotated single-cell data matrices

  bioinformatics

• biopython

  Parse molecular biology files and automate NCBI queries

  bioinformatics

• gget

  Quick gene and sequence lookups across 20+ bio databases

  bioinformatics

• deeptools

  Convert BAM files to bigWig and generate ChIP/ATAC heatmaps

  bioinformatics

• arboreto

  Infer gene regulatory networks at scale

  bioinformatics

• umap-learn

  Reduce high-dimensional data to 2D/3D with UMAP

  bioinformatics

• adaptyv

  Submit protein sequences to automated cloud lab

  bioinformatics

Cheminformatics (4)

Molecular modeling, drug discovery, and computational chemistry toolkits.

• rdkit

  Fine-grained cheminformatics and molecular analysis with RDKit

  cheminformatics

• datamol

  Drug discovery cheminformatics with a clean Pythonic RDKit wrapper

  cheminformatics

• deepchem

  Predict molecular properties with GNNs and MoleculeNet benchmarks

  cheminformatics

• molfeat

  Convert SMILES to ML-ready features with 100+ featurizers

  cheminformatics

ML libraries (6)

PyTorch, scikit-learn, Transformers, and explainability tools for scientific ML.

• pytorch-lightning

  Organize PyTorch training with multi-GPU and experiment logging

  ml-libraries

• scikit-learn

  Build and evaluate machine learning pipelines in Python

  ml-libraries

• transformers

  Load and fine-tune Hugging Face transformer models

  ml-libraries

• torch-geometric

  Build graph neural networks with PyTorch Geometric

  ml-libraries

• stable-baselines3

  Train RL agents with production-ready algorithm implementations

  ml-libraries

• shap

  Explain any ML model's predictions with SHAP values

  ml-libraries

Data science & statistics (12)

Dataframes, statistical modeling, time series, EDA, and scientific visualization.

• polars

  Fast pandas replacement with lazy evaluation for large DataFrames

  data-science

• dask

  Scale pandas and NumPy workflows beyond available RAM

  data-science

• pymc

  Build hierarchical Bayesian models with MCMC and posterior checks

  data-science

• statsmodels

  Run statistical models with full diagnostics and inference tables

  data-science

• statistical-analysis

  Choose the right statistical test and report results in APA

  data-science

• exploratory-data-analysis

  Auto-detect and profile any scientific data file format

  data-science

• matplotlib

  Fine-grained control over every element of a Python plot

  data-science

• seaborn

  Quick statistical plots with attractive defaults from pandas

  data-science

• networkx

  Analyze and visualize graph and network data structures

  data-science

• sympy

  Symbolic algebra, calculus, and exact mathematical computation

  data-science

• aeon

  scikit-learn-compatible ML toolkit for time series

  data-science

• timesfm-forecasting

  Zero-shot time series forecasting without model training

  data-science

Quantum computing (2)

Quantum circuits, algorithms, and simulation frameworks.

• qiskit

  Build and run quantum circuits on IBM Quantum hardware

  quantum-computing

• pennylane

  Train quantum-classical hybrid models with gradient descent

  quantum-computing

Clinical & medical (3)

DICOM imaging, clinical data, and medical decision support workflows.

• clinical-reports

  Draft HIPAA/ICH-compliant clinical reports and documentation

  clinical

• pydicom

  Read, write, and anonymize DICOM medical imaging files

  clinical

• pyhealth

  Train and evaluate ML models on EHR and clinical datasets

  clinical

Compute & tooling (9)

GPU optimization, modal compute, document conversion, and general scientific tooling.

• modal

  Deploy Python code and ML models to serverless cloud GPUs

• optimize-for-gpu

  GPU-accelerate existing Python NumPy and pandas code

• parallel-web

  Search the web and extract content with academic source priority

• astropy

  Astronomical data analysis and coordinate transforms

• markitdown

  Convert any document or file format to clean Markdown

• database-lookup

  Query 78 public scientific databases from a single skill

• generate-image

  Generate photos, illustrations, and visual assets with AI

• infographics

  Create polished data-driven infographics with AI refinement

• market-research-reports

  Generate 50-page consulting-style market research reports

Scientific writing (separate page) (3)

Papers, grants, citations, and slides — the full scientific-writing bench lives at /skills/topic/scientific-writing/.

• scientific-writing

  Write publication-ready scientific manuscripts end-to-end

  scientific-writing

• literature-review

  Systematic literature search across multiple academic databases

  scientific-writing

• research-grants

  Draft competitive grant proposals for major funding agencies

  scientific-writing

Other (18)

Skills tagged this topic that don’t fit the groupings above.

• bgpt-paper-search

  Extract structured experimental data from full-text papers

  scientific-writing

• citation-management

  Find, verify, and format academic citations accurately

  scientific-writing

• hypothesis-generation

  Formulate testable hypotheses from experimental observations

  scientific-writing

• latex-posters

  Design conference research posters in LaTeX

  scientific-writing

• markdown-mermaid-writing

  Create scientific documents with embedded Mermaid diagrams

  scientific-writing

• open-notebook

  Self-hosted AI research notebook across 16+ providers

  scientific-writing

• paper-lookup

  Search ten academic databases in one command

  scientific-writing

• paperzilla

  Chat with Paperzilla for curated paper recommendations

  scientific-writing

• peer-review

  Write formal peer reviews with structured checklist evaluation

  scientific-writing

• pyzotero

  Programmatically manage Zotero libraries with Python

  scientific-writing

• research-lookup

  Auto-routing research search across web and academic backends

  scientific-writing

• scholar-evaluation

  Score scholarly work across research quality dimensions

  scientific-writing

• scientific-brainstorming

  Open-ended research ideation and gap identification

  scientific-writing

• scientific-critical-thinking

  Grade evidence quality and identify experimental design flaws

  scientific-writing

• scientific-schematics

  Generate publication-quality scientific diagrams with AI

  scientific-writing

• scientific-slides

  Build structured research talk slide decks

  scientific-writing

• scientific-visualization

  Produce journal-formatted multi-panel publication figures

  scientific-writing

• venue-templates

  Get venue-specific LaTeX templates and submission requirements

  scientific-writing

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